concept.hpp File Reference

Core alphabet concept and free function/type trait wrappers. More...

#include <type_traits>
#include <bio/alphabet/custom/tag.hpp>
#include <bio/alphabet/exception.hpp>
#include <bio/core.hpp>
#include <bio/meta/concept/core_language.hpp>
#include <bio/meta/detail/type_inspection.hpp>
#include <bio/meta/tag/priority_tag.hpp>
#include <bio/meta/type_traits/basic.hpp>

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Concepts
concept	bio::alphabet::semialphabet
	The basis for bio::alphabet::alphabet, but requires only rank interface (not char).
concept	bio::alphabet::writable_semialphabet
	A refinement of bio::alphabet::semialphabet that adds assignability.
concept	bio::alphabet::alphabet
	The generic alphabet concept that covers most data types used in ranges.
concept	bio::alphabet::writable_alphabet
	Refines bio::alphabet::alphabet and adds assignability.

Namespaces
namespace	bio
	The main BioC++ namespace.
namespace	bio::alphabet
	The alphabet module's namespace.

Typedefs
template<typename alphabet_type >
using	bio::alphabet::char_t = decltype(bio::alphabet::to_char(std::declval< alphabet_type const >()))
	The char_type of the alphabet; defined as the return type of bio::alphabet::to_char.
template<typename semi_alphabet_type >
using	bio::alphabet::rank_t = decltype(bio::alphabet::to_rank(std::declval< semi_alphabet_type >()))
	The rank_type of the semi-alphabet; defined as the return type of bio::alphabet::to_rank.

Variables
template<typename alph_t , typename wrap_t = meta::default_initialisable_wrap_t<alph_t>>
constexpr auto	bio::alphabet::size
	A type trait that holds the size of a (semi-)alphabet.
Function objects
constexpr auto	bio::alphabet::assign_char_strictly_to
	Assign a character to an alphabet object, throw if the character is not valid.
constexpr auto	bio::alphabet::assign_char_to
	Assign a char to an alphabet object.
constexpr auto	bio::alphabet::assign_rank_to
	Assign a rank to an alphabet object.
template<typename alph_t >
constexpr auto	bio::alphabet::char_is_valid_for
	Returns whether a character is in the valid set of a bio::alphabet::alphabet (usually implies a bijective mapping to an alphabet value).
constexpr auto	bio::alphabet::to_char
	Return the char representation of an alphabet object.
constexpr auto	bio::alphabet::to_rank
	Return the rank representation of a (semi-)alphabet object.

Detailed Description

Core alphabet concept and free function/type trait wrappers.

Author

Hannes Hauswedell <hannes.hauswedell AT decode.is>