translation.hpp File Reference

Provides functions for translating a triplet of nucleotides into an amino acid. More...

#include <tuple>
#include <bio/alphabet/aminoacid/aa27.hpp>
#include <bio/alphabet/aminoacid/translation_details.hpp>
#include <bio/alphabet/aminoacid/translation_genetic_code.hpp>
#include <bio/ranges/type_traits.hpp>

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Namespaces
namespace	bio
	The main BioC++ namespace.
namespace	bio::alphabet
	The alphabet module's namespace.

Enumerations
enum class	bio::alphabet::translation_frames : uint8_t {   bio::alphabet::translation_frames::FWD_FRAME_0 = 1 , bio::alphabet::translation_frames::FWD_FRAME_1 = 1 << 1 , bio::alphabet::translation_frames::FWD_FRAME_2 = 1 << 2 , bio::alphabet::translation_frames::REV_FRAME_0 = 1 << 3 ,   bio::alphabet::translation_frames::REV_FRAME_1 = 1 << 4 , bio::alphabet::translation_frames::REV_FRAME_2 = 1 << 5 , bio::alphabet::translation_frames::FWD_REV_0 = FWD_FRAME_0 | REV_FRAME_0 , bio::alphabet::translation_frames::FWD_REV_1 = FWD_FRAME_1 | REV_FRAME_1 ,   bio::alphabet::translation_frames::FWD_REV_2 = FWD_FRAME_2 | REV_FRAME_2 , bio::alphabet::translation_frames::FWD = FWD_FRAME_0 | FWD_FRAME_1 | FWD_FRAME_2 , bio::alphabet::translation_frames::REV = REV_FRAME_0 | REV_FRAME_1 | REV_FRAME_2 , bio::alphabet::translation_frames::SIX_FRAME = FWD | REV }
	Specialisation values for single and multiple translation frames. More...

Functions
template<genetic_code gc = genetic_code::CANONICAL, nucleotide nucl_type>
constexpr aa27	bio::alphabet::translate_triplet (nucl_type const &n1, nucl_type const &n2, nucl_type const &n3) noexcept
	Translate one nucleotide triplet into single amino acid (single nucleotide interface).
Binary operators for bio::alphabet::translation_frames.
Perform binary operations like on ints or weak enums.
constexpr translation_frames	bio::alphabet::operator& (translation_frames lhs, translation_frames rhs) noexcept
	Binary operators for bio::alphabet::translation_frames.
constexpr translation_frames &	bio::alphabet::operator&= (translation_frames &lhs, translation_frames rhs) noexcept
	Binary operators for bio::alphabet::translation_frames.
constexpr translation_frames	bio::alphabet::operator^ (translation_frames lhs, translation_frames rhs) noexcept
	Binary operators for bio::alphabet::translation_frames.
constexpr translation_frames &	bio::alphabet::operator^= (translation_frames &lhs, translation_frames rhs) noexcept
	Binary operators for bio::alphabet::translation_frames.
constexpr translation_frames	bio::alphabet::operator| (translation_frames lhs, translation_frames rhs) noexcept
	Binary operators for bio::alphabet::translation_frames.
constexpr translation_frames &	bio::alphabet::operator|= (translation_frames &lhs, translation_frames rhs) noexcept
	Binary operators for bio::alphabet::translation_frames.
constexpr translation_frames	bio::alphabet::operator~ (translation_frames lhs) noexcept
	Binary operators for bio::alphabet::translation_frames.

Detailed Description

Provides functions for translating a triplet of nucleotides into an amino acid.

Author

Sara Hetzel <sara.hetzel AT fu-berlin.de>