aliases.hpp File Reference

Provides aliases for qualified. More...

#include <bio/alphabet/concept.hpp>
#include <bio/alphabet/nucleotide/dna15.hpp>
#include <bio/alphabet/nucleotide/dna4.hpp>
#include <bio/alphabet/nucleotide/dna5.hpp>
#include <bio/alphabet/nucleotide/rna15.hpp>
#include <bio/alphabet/nucleotide/rna4.hpp>
#include <bio/alphabet/nucleotide/rna5.hpp>
#include <bio/alphabet/quality/concept.hpp>
#include <bio/alphabet/quality/phred42.hpp>
#include <bio/alphabet/quality/qualified.hpp>

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Namespaces
namespace	bio
	The main BioC++ namespace.
namespace	bio::alphabet
	The alphabet module's namespace.

Typedefs
using	bio::alphabet::dna15q = qualified< dna15, phred42 >
	An alphabet that stores a bio::alphabet::dna15 letter and an bio::alphabet::qualified letter at each position.
using	bio::alphabet::dna4q = qualified< dna4, phred42 >
	An alphabet that stores a bio::alphabet::dna4 letter and an bio::alphabet::phred42 letter at each position.
using	bio::alphabet::dna5q = qualified< dna5, phred42 >
	An alphabet that stores a bio::alphabet::dna5 letter and an bio::alphabet::phred42 letter at each position.
using	bio::alphabet::rna15q = qualified< rna15, phred42 >
	An alphabet that stores a bio::alphabet::rna15 letter and an bio::alphabet::qualified letter at each position.
using	bio::alphabet::rna4q = qualified< rna4, phred42 >
	An alphabet that stores a bio::alphabet::rna4 letter and an bio::alphabet::phred42 letter at each position.
using	bio::alphabet::rna5q = qualified< rna5, phred42 >
	An alphabet that stores a bio::alphabet::rna5 letter and an bio::alphabet::phred42 letter at each position.

Detailed Description

Provides aliases for qualified.

Author

Hannes Hauswedell <hannes.hauswedell AT decode.is>