aliases.hpp

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// -----------------------------------------------------------------------------------------------------
// Copyright (c) 2022 deCODE Genetics
// Copyright (c) 2006-2020, Knut Reinert & Freie Universität Berlin
// Copyright (c) 2016-2020, Knut Reinert & MPI für molekulare Genetik
// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License
// shipped with this file and also available at: https://github.com/biocpp/biocpp-core/blob/main/LICENSE.md
// -----------------------------------------------------------------------------------------------------
 
#pragma once
 
#include <bio/alphabet/concept.hpp>
#include <bio/alphabet/nucleotide/dna15.hpp>
#include <bio/alphabet/nucleotide/dna4.hpp>
#include <bio/alphabet/nucleotide/dna5.hpp>
#include <bio/alphabet/nucleotide/rna15.hpp>
#include <bio/alphabet/nucleotide/rna4.hpp>
#include <bio/alphabet/nucleotide/rna5.hpp>
#include <bio/alphabet/quality/concept.hpp>
#include <bio/alphabet/quality/phred42.hpp>
#include <bio/alphabet/quality/qualified.hpp>
 
namespace bio::alphabet
{
 
using dna4q = qualified<dna4, phred42>;
 
using dna5q = qualified<dna5, phred42>;
 
using rna4q = qualified<rna4, phred42>;
 
using rna5q = qualified<rna5, phred42>;
 
using dna15q = qualified<dna15, phred42>;
 
using rna15q = qualified<rna15, phred42>;
 
} // namespace bio::alphabet