concept.hpp File Reference

Quality alphabet concept. More...

#include <bio/alphabet/concept.hpp>

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Concepts
concept	bio::alphabet::quality
	A concept that indicates whether an alphabet represents quality scores.
concept	bio::alphabet::writable_quality
	A concept that indicates whether a writable alphabet represents quality scores.

Namespaces
namespace	bio
	The main BioC++ namespace.
namespace	bio::alphabet
	The alphabet module's namespace.

Typedefs
template<typename alphabet_type >
using	bio::alphabet::phred_t = decltype(bio::alphabet::to_phred(std::declval< alphabet_type >()))
	The phred_type of the alphabet; defined as the return type of bio::alphabet::to_phred.

Variables
Function objects (Quality)
constexpr auto	bio::alphabet::assign_phred_to
	Assign a phred score to a quality alphabet object.
constexpr auto	bio::alphabet::to_phred
	The public getter function for the phred representation of a quality score.

Detailed Description

Quality alphabet concept.

Author

Hannes Hauswedell <hannes.hauswedell AT decode.is>

Marie Hoffmann <marie.hoffmann AT fu-berlin.de>

Jörg Winkler <j.winkler AT fu-berlin.de>