| ▼ bio | |
| ▼ alphabet | |
| ► aminoacid | |
| aa10li.hpp | Provides bio::alphabet::aa10li, container aliases and string literals |
| aa10murphy.hpp | Provides bio::alphabet::aa10murphy, container aliases and string literals |
| aa20.hpp | Provides bio::alphabet::aa20, container aliases and string literals |
| aa27.hpp | Provides bio::alphabet::aa27, container aliases and string literals |
| all.hpp | Meta-header for the aminoacid submodule; includes all headers from alphabet/aminoacid/ |
| aminoacid_base.hpp | Provides bio::alphabet::aminoacid_base |
| concept.hpp | Provides bio::alphabet::aminoacid |
| translation.hpp | Provides functions for translating a triplet of nucleotides into an amino acid |
| translation_details.hpp | Provides translation details for nucleotide to aminoacid translation |
| translation_genetic_code.hpp | Genetic codes used for translating a triplet of nucleotides into an amino acid |
| ► cigar | |
| all.hpp | Meta-header for the cigar submodule; includes all headers from alphabet/cigar/ |
| cigar.hpp | Provides the bio::alphabet::cigar alphabet |
| cigar_op.hpp | Introduces the cigar_op alphabet |
| ► composite | |
| all.hpp | Meta-header for the composite submodule; includes all headers from alphabet/composite/ |
| detail.hpp | Provides implementation detail for bio::alphabet::variant and bio::alphabet::tuple_base |
| semialphabet_any.hpp | Provides bio::alphabet::semialphabet_any |
| tuple_base.hpp | Provides bio::alphabet::tuple_base |
| variant.hpp | Provides bio::alphabet::variant |
| ► custom | |
| all.hpp | Meta-header for the custom submodule; includes all headers from alphabet/custom/ |
| char.hpp | Provides alphabet adaptations for standard char types |
| tag.hpp | Provides the customisation tags for the alphabet concepts |
| uint.hpp | Provides alphabet adaptations for standard uint types |
| ► detail | |
| convert.hpp | |
| to_lower.hpp | |
| ► gap | |
| all.hpp | Meta-header for the gap submodule; includes all headers from alphabet/gap/ |
| gap.hpp | Provides bio::alphabet::gap |
| gapped.hpp | Provides bio::alphabet::gapped |
| ► mask | |
| all.hpp | Meta-header for the mask submodule; includes all headers from alphabet/mask/ |
| mask.hpp | Create a mask composite which can be applied with another alphabet |
| masked.hpp | Extends a given alphabet with the mask alphabet |
| ► nucleotide | |
| all.hpp | Meta-header for the nucleotide submodule; includes all headers from alphabet/nucleotide/ |
| concept.hpp | Provides bio::alphabet::nucleotide |
| dna15.hpp | Provides bio::alphabet::dna15, container aliases and string literals |
| dna16sam.hpp | Provides bio::alphabet::dna16sam |
| dna4.hpp | Provides bio::alphabet::dna4, container aliases and string literals |
| dna5.hpp | Provides bio::alphabet::dna5, container aliases and string literals |
| nucleotide_base.hpp | Provides bio::alphabet::nucleotide_base |
| rna15.hpp | Provides bio::alphabet::rna15, container aliases and string literals |
| rna4.hpp | Provides bio::alphabet::rna4, container aliases and string literals |
| rna5.hpp | Provides bio::alphabet::rna5, container aliases and string literals |
| ► quality | |
| aliases.hpp | Provides aliases for qualified |
| all.hpp | Meta-header that includes all headers from alphabet/quality/ |
| concept.hpp | Quality alphabet concept |
| phred42.hpp | Provides bio::alphabet::phred42 quality scores |
| phred63.hpp | Provides bio::alphabet::phred63 quality scores |
| phred68legacy.hpp | Provides bio::alphabet::phred68legacy quality scores |
| qualified.hpp | Provides quality alphabet composites |
| quality_base.hpp | Provides bio::alphabet::phred42 quality scores |
| all.hpp | Meta-header for the alphabet module |
| base.hpp | Provides bio::alphabet::base |
| concept.hpp | Core alphabet concept and free function/type trait wrappers |
| exception.hpp | Exceptions thrown by entities in the alphabet module |
| fmt.hpp | Core alphabet concept and free function/type trait wrappers |
| hash.hpp | Provides overloads for std::hash |
| proxy_base.hpp | Provides bio::alphabet::proxy_base |
| ▼ meta | |
| ► concept | |
| all.hpp | Meta-include for custom concepts |
| core_language.hpp | Provides concepts for core language types and relations that don't have concepts in C++20 (yet) |
| tuple.hpp | Provides bio::meta::tuple_like |
| ► detail | |
| all.hpp | Meta-header for implementation details in the core module |
| empty_type.hpp | Provides bio::meta::detail::empty_type |
| int_types.hpp | Provides metaprogramming utilities for integer types |
| type_inspection.hpp | Provides traits to inspect some information of a type, for example its name |
| ► tag | |
| all.hpp | Meta-header for the folder |
| priority_tag.hpp | Bio::meta::priority_tag |
| ttag.hpp | Provides bio::meta::ttag |
| vtag.hpp | Provides bio::meta::vtag |
| ► type_list | |
| all.hpp | Meta-header for the Utility / Type List submodule |
| function.hpp | Provides algorithms for meta programming, parameter packs and bio::meta::type_list |
| traits.hpp | Provides traits for meta::type_list |
| traits_detail.hpp | Provides various traits for template packs |
| type_list.hpp | Provides bio::meta::type_list |
| ► type_traits | |
| all.hpp | Provides various type traits |
| basic.hpp | Provides various type traits on generic types |
| concept.hpp | Provides the concepts bio::meta::transformation_trait and bio::meta::unary_type_trait |
| template_inspection.hpp | Provides various traits to inspect templates |
| transformation_trait_or.hpp | Provides bio::meta::transformation_trait_or |
| all.hpp | Meta-header for the meta module |
| overloaded.hpp | Provides bio::meta::overloaded |
| pod_tuple.hpp | Provides bio::meta::pod_tuple |
| tuple_utility.hpp | Provides utility functions for tuple like interfaces |
| ▼ ranges | |
| ► container | |
| aligned_allocator.hpp | Provides bio::ranges::aligned_allocator |
| all.hpp | Meta-header for the container submodule |
| bitcompressed_vector.hpp | Provides bio::ranges::bitcompressed_vector |
| concatenated_sequences.hpp | Provides bio::ranges::concatenated_sequences |
| concept.hpp | Adaptations of concepts from the standard library |
| dictionary.hpp | Provides bio::ranges::dictionary |
| dynamic_bitset.hpp | A constexpr bitset implementation with dynamic size at compile time |
| small_string.hpp | A constexpr string implementation to manipulate string literals at compile time |
| small_vector.hpp | A constexpr vector implementation with dynamic size at compile time |
| ► detail | |
| inherited_iterator_base.hpp | Provides the bio::ranges::detail::inherited_iterator_base template |
| misc.hpp | Provides various utility functions |
| random_access_iterator.hpp | Provides the bio::ranges::detail::random_access_iterator class |
| ► views | |
| add_reverse_complement.hpp | Provides bio::views::add_reverse_complement |
| all.hpp | Meta-header for the views submodule |
| char_strictly_to.hpp | Provides bio::ranges::views::char_strictly_to |
| char_to.hpp | Provides bio::views::char_to |
| complement.hpp | Provides bio::views::complement |
| convert.hpp | Provides bio::views::convert |
| deep.hpp | Provides bio::views::deep |
| detail.hpp | Auxiliary header for the views submodule |
| interleave.hpp | Provides bio::views::interleave |
| make_convertible.hpp | Provides bio::views::take |
| pairwise_combine.hpp | Provides bio::views::pairwise_combine |
| persist.hpp | Provides bio::views::persist |
| rank_to.hpp | Provides bio::views::rank_to |
| repeat.hpp | Provides the views::repeat_view |
| repeat_n.hpp | Provides bio::views::repeat_n |
| single_pass_input.hpp | Provides bio::alphabet::single_pass_input_view |
| slice.hpp | Provides bio::views::slice |
| take.hpp | Provides bio::views::take |
| take_exactly.hpp | Provides bio::views::take_exactly and bio::views::take_exactly_or_throw |
| to_char.hpp | Provides bio::views::to_char |
| to_lower.hpp | Provides bio::views::to_lower |
| to_rank.hpp | Provides bio::views::to_rank |
| to_upper.hpp | Provides bio::views::to_upper |
| transform_by_pos.hpp | Provides bio::views::transform_by_pos |
| translate.hpp | Provides bio::views::translate and bio::views::translate_single |
| translate_join.hpp | Provides bio::views::translate_join |
| translate_single.hpp | Provides bio::views::translate and bio::views::translate_single |
| trim_quality.hpp | Provides bio::views::trim_quality |
| type_reduce.hpp | Provides bio::views::type_reduce |
| validate_char_for.hpp | Provides bio::ranges::views::validate_char_for |
| zip.hpp | Provides bio::views::zip |
| all.hpp | Meta-header for the ranges module |
| concept.hpp | Additional non-standard concepts for ranges |
| hash.hpp | Provides overloads for std::hash |
| to.hpp | An implementation of C++23's std::ranges::to |
| type_traits.hpp | Provides various transformation traits used by the range module |
| core.hpp | Provides platform and dependency checks |
| ▼ doc | |
| ▼ howto | |
| ► use_cereal | |
| load.hpp | |
| store.hpp | |
1.9.6